Real-time
Two-way sync
Changes in Atlassian or NextGen Healthcare instantly reflect in both systems. No stale data, no manual imports.
Business productivity
Atlassian to NextGen Healthcare integration — real-time, two-way sync
Keep Atlassian and NextGen Healthcare in sync without custom scripts. Cut weeks of integration work, eliminate silent data drift, and give your team a single, reliable source of truth.
- SOC 2 and 6 other compliance frameworks
- POC with real engineers in minutes
Adopted by fast-scaling companies moving mission-critical data in real time
Case study
Migrated from Mulesoft
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Migrated from Fivetran
Case study
Migrated from Celigo
Why teams connect Atlassian and NextGen Healthcare
Stop re-entering the same information in Atlassian and NextGen Healthcare: Stacksync keeps the records they share consistent in real time, in both directions.
Two tools in the daily stack often hold overlapping information: the same people, the same companies, or the same pieces of work, described twice. The tools do different jobs, so consolidating is not the answer; the overlap just needs to stop drifting.
Stacksync syncs Jira Projects, Boards and Sprints, Issue Comments, Attachments in Atlassian with Patients, Appointments, Encounters, Providers in NextGen Healthcare in real time. You choose which records overlap, map the fields that should match, and pick a direction or let changes flow both ways. From then on, an update made in either tool is reflected in the other within seconds, without exports or copy-paste.
Because the sync is field-level, each tool keeps its own extras; only the shared data is held in agreement.
Common use cases
- Mirror Jira projects into a SQL database for engineering throughput and SLA reporting.
- Create Jira issues from records in other systems, such as onboarding tasks generated from a closed-won CRM deal.
- Sync patient demographics into a CRM for engagement and intake workflows.
- Push appointment schedules to reminder and communication tools and write confirmations back.
Where NextGen Healthcare is where the team documents or plans: keep its data fed
Information that originates in Atlassian stays current in NextGen Healthcare instead of going stale after a one-time paste.
Handoffs between teams
When work started in one tool continues in the other, the shared fields travel with it automatically.
Where both tools track people or companies: one consistent record
Contact and company details corrected in either tool update the other, so nobody works from the old version.
What you can sync between Atlassian and NextGen Healthcare
Representative objects on each side — any object or custom field can map to any target. Schemas are auto-detected; types are converted between the two systems.
| Atlassian objects | NextGen Healthcare objects | |
|---|---|---|
| Jira Projects Containers that scope issues, workflows, and permissions for a sync. | Medications & Allergies Clinical list data read via standardized FHIR resources for care coordination. | |
| Boards and Sprints Agile structures read to report on sprint contents and status. | Lab Results Result data read for patient-facing portals and analytics. | |
| Issue Comments Threaded discussion synced into linked tickets in external systems. | Insurance / Coverage Payer and eligibility data reconciled with billing and clearinghouse systems. | |
| Attachments Files on issues mirrored to paired records where needed. | Charges & Billing Practice-management financial data synced for revenue-cycle analytics. | |
| Custom Fields Instance-specific fields (customfield IDs) that carry most business-specific data in syncs. | Patients Demographic records synced to CRMs and engagement tools for outreach and intake. | |
| Workflows and Statuses Status transitions mapped to stages in the paired system. | Appointments Schedule data read and written for reminders, self-scheduling, and capacity reporting. |
What ships with Atlassian ⇄ NextGen Healthcare
Connect Atlassian and NextGen Healthcare for flexible, real-time data sync.
Real-time sync, workflow automation, event queues, EDI, and monitoring, for every Atlassian–NextGen Healthcare connection.
No-code + pro-code
Workflow automation
Trigger automated workflows whenever Atlassian or NextGen Healthcare data changes, update records, fire webhooks, or kick off sequences without brittle API scripts.
At scale
Event queues
Handle millions of events per minute without losing a single Atlassian or NextGen Healthcare record.
Observability
Monitoring
Track your Atlassian ⇄ NextGen Healthcare sync health, view errors, and replay failed events in one click.
Trading partners
EDI
Transform legacy EDI complexity into simple database interactions between Atlassian and NextGen Healthcare.
How the Atlassian and NextGen Healthcare connectors work
Atlassian
- Integration surface
- REST APIs per product (Jira Cloud and Confluence Cloud)
- Authentication
- OAuth 2.0 (3LO) for apps or API tokens with basic auth for scripts
- Change detection
- Webhooks on issue and page events, plus JQL polling on the updated timestamp for backfill
- Capabilities
- read · write · webhooks
NextGen Healthcare
- Integration surface
- REST API, including FHIR-based endpoints published through NextGen's developer API program
- Authentication
- OAuth 2.0
- Change detection
- Polling, typically filtering on last-updated timestamps; no general-purpose webhook surface
- Capabilities
- read · write
- Rate limits
- Subject to the platform's API rate limits and healthcare data-access agreements.
How it works
How to connect Atlassian to NextGen Healthcare — three steps, no code
Configure and sync within minutes, no code. Whether you sync 50k or 100M+ records, Stacksync handles the queues, infra, and plumbing. Integrations are non-invasive and need zero setup on your systems.
- 01
Connect your apps
Authenticate Atlassian and NextGen Healthcare with each platform's native method — OAuth, API keys, or service accounts — plus secure options like SSH tunneling, IP whitelisting, and VPC peering.
Atlassian
connected
NextGen Healthcare
connected
OAuth 2.0SSH tunnelSSL certificateVPC peering - 02
Choose tables
Pick the Atlassian and NextGen Healthcare objects to sync — Stacksync auto-detects both schemas, including custom fields where the platform exposes them. Sync to existing tables, or let Stacksync create new ones with ideal data types.
objects · Atlassian ⇄ NextGen HealthcareCustomers 12,480Sales Orders 8,213Invoices 5,902Items 1,344 - 03
Map fields
Fields map automatically even when names and types differ. Stacksync handles transformation and type casting for you, zero configuration required.
Atlassian NextGen HealthcareCompany company_name textEmail email textAmount amount numericCreated created_at timestamp
FAQ
Atlassian and NextGen Healthcare integration FAQ
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Yes. Stacksync provides a managed, real-time two-way integration between Atlassian and NextGen Healthcare: authenticate both systems, choose the objects to sync (such as Atlassian's Jira Projects and Boards and Sprints), map fields visually, and changes propagate both ways in milliseconds — no code required.
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Atlassian: JQL supports querying issues by updated time, which gives polling syncs a reliable incremental cursor. NextGen Healthcare: Integrations handle PHI, so they typically require a business associate agreement and HIPAA-compliant infrastructure on the sync side. Stacksync's field mapping accounts for these differences between Atlassian and NextGen Healthcare without custom code.
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Stacksync is SOC 2 Type II and ISO 27001 certified with HIPAA BAA support. Data is encrypted in transit, and a zero-persistent-storage architecture means Atlassian and NextGen Healthcare records are not retained after a sync operation.
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Stacksync pricing is usage-based and starts at $1,000/month, including the managed Atlassian and NextGen Healthcare connectors, real-time two-way sync, monitoring, and support. That replaces building and maintaining a custom Atlassian–NextGen Healthcare integration in-house.
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Yes — Stacksync ships production-grade connectors for both Atlassian and NextGen Healthcare. The connectors handle authentication, schema detection, rate limits, and retries; you configure the sync, and Stacksync operates it.
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Change detection on Atlassian: Webhooks on issue and page events, plus JQL polling on the updated timestamp for backfill. On NextGen Healthcare: Polling, typically filtering on last-updated timestamps; no general-purpose webhook surface. Each detected change propagates to the other side in milliseconds, with field-level conflict resolution and an inspectable event log.
SECURITY
Security teams love Stacksync
As a data company, we understand the importance of keeping your data secure. Stacksync is built with security best practices to keep your data safe at every layer, and is DPF-certified for US, EU, UK and CH data transfers.
SOC 2 type II
ISO 27001
HIPAA BAA
GDPR
CCPA
CSA STAR
DPF US-EU-UK-CH
→ SECURITY WITH BENEFITS
SSO & SCIM
Let your users access Stacksync from your centralized user management systems. Works with Okta, Azure, Google SSO and more.
Alerts
Immediately get alerted about record syncing issues over email, Slack, PagerDuty and WhatsApp. Resolve issues from a centralized dashboard with retry and revert options.
Secure connection options
Securely connects to your systems with:
Related integrations
Every pair below is a real-time, two-way sync. Search all 386 integrations available for Atlassian and NextGen Healthcare.
Popular · 8 of 386
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Atlassian ⇄ Campfire -
Atlassian ⇄ Front -
Atlassian ⇄ Amazon Seller Central -
Atlassian ⇄ SendGrid -
NextGen Healthcare ⇄ Microsoft Dynamics 365 -
NextGen Healthcare ⇄ Microsoft Teams -
NextGen Healthcare ⇄ Orderful -
NextGen Healthcare ⇄ Resend
No integrations match .
